Validation of a search technique for crystal structure prediction of flexible molecules by application to piracetam.
نویسندگان
چکیده
A new approach to the crystal structure prediction of flexible molecules is presented. It is applied to piracetam, whose conformational polymorphs exhibit a variety of hydrogen-bond motifs but lack the intramolecular hydrogen bond found in the gas-phase ab initio optimized conformer. Stable crystal packing can result when favourable intermolecular interactions are made possible when the molecule distorts from the gas-phase conformation. If the resulting intermolecular lattice energy is sufficiently favourable to compensate for the intramolecular energy penalty associated with the suboptimal gas-phase conformation, then the crystal structure may be experimentally feasible. The new approach involves searching for low-energy crystal structures using a large number of rigid conformers, firstly to systematically explore which regions of conformational space could give rise to low-energy hydrogen-bonded crystal structures, and then to refine the search using crystallographic insight to optimize particular intermolecular interactions. The timely discovery of a new polymorph (form IV) by an independent experimental team allowed this approach to be validated by way of a ;blind test' of crystal structure prediction. Form IV was successfully identified as the most favourable computed crystal structure with a conformation very distinct from that in the previously known polymorphs.
منابع مشابه
Crystal Structure of Schiff base Compound 2-[(2-chloro-4-nitrophenyl) iminomethyl] phenol
Single crystals of Schiff base compound 2-[(2-chloro-4-nitrophenyl) iminomethyl] phenol (1) were grown by the slow evaporation technique at room temperature. The crystal structure of the title compound was determined by single crystal X-ray diffraction. The title compound crystallizes in the monoclinic system, space group P21, with two symmetry independent molecules. Intramolecular O-H···N hydr...
متن کاملComputer-aided design of crystalline drugs
A method to predict crystal structures of crystaline drugs by systematic searching for minimum-energy packings is outlined. It bases on the use of the observed space-group occurrence factors to postulate crystal symmetry. The search region is chosen within the fundamental unit of multi-dimensional crystal-structure parameter space, including the cell parameters and rigidbody mlecular parameters...
متن کاملA Novel QSAR Model for the Evaluation and Prediction of (E)-N’-Benzylideneisonicotinohydrazide Derivatives as the Potent Anti-mycobacterium Tuberculosis Antibodies Using Genetic Function Approach
Abstract A dataset of (E)-N’-benzylideneisonicotinohydrazide derivatives as a potent anti-mycobacterium tuberculosis has been investigated utilizing Quantitative Structure-Activity Relationship (QSAR) techniques. Genetic Function Algorithm (GFA) and Multiple Linear Regression Analysis (MLRA) were used to select the descriptors and to generate the correlation QSAR models that relate the Mi...
متن کاملAPPLICATION OF FINITE ELEMENT MODEL UPDATING FOR DAMAGE ASSESSMENT OF SPACE STRUCTURE USING CHARGED SYSTEM SEARCH ALGORITHM
Damage assessment is one of the crucial topics in the operation of structures. Multiplicities of structural elements and joints are the main challenges about damage assessment of space structure. Vibration-based damage evaluation seems to be effective and useful for application in industrial conditions and the low-cost. A method is presented to detect and assess structural damages from changes ...
متن کاملSolving the flexible job shop problem by hybrid metaheuristics-based multiagent model
The flexible job shop scheduling problem (FJSP) is a generalization of the classical job shop scheduling problem that allows to process operations on one machine out of a set of alternative machines. The FJSP is an NP-hard problem consisting of two sub-problems, which are the assignment and the scheduling problems. In this paper, we propose how to solve the FJSP by hybrid metaheuristics-based c...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Acta crystallographica. Section B, Structural science
دوره 61 Pt 5 شماره
صفحات -
تاریخ انتشار 2005